Feature Name | Class | Elev. meters | County | Latitude DMS | Longitude DMS |
| Smith Creek | Stream | | Jefferson | 40 04 32 N | 097 06 00 W |
| Smith Creek | Stream | | Seward | 40 47 30 N | 097 20 02 W |
| Snake Creek | Stream | | Antelope | 42 07 40 N | 098 13 15 W |
| Snake Creek | Stream | 379 | Gage | 40 19 50 N | 096 49 17 W |
| Snake Creek | Stream | | Gage | 40 19 51 N | 096 49 16 W |
| Snake Creek | Stream | | Richardson | 40 01 38 N | 095 28 45 W |
| Snake Creek | Stream | | Sioux | 42 01 33 N | 102 45 02 W |
| Snake River | Stream | | Cherry | 42 46 47 N | 100 47 41 W |
| Soap Creek | Stream | | Gage | 40 20 47 N | 096 50 48 W |
| Soap Creek | Stream | | Webster | 40 03 33 N | 098 18 59 W |
| Soldier Creek | Stream | | Knox | 42 42 46 N | 098 09 59 W |
| Soldier Creek | Stream | | Sioux | 42 39 39 N | 103 28 01 W |
| Soldier Spring Creek | Stream | | Sioux | 42 37 02 N | 103 39 54 W |
| South Antelope Creek | Stream | | Sioux | 42 56 22 N | 103 52 42 W |
| South Blackbird Creek | Stream | | Thurston | 42 06 42 N | 096 19 53 W |
| South Branch Box Butte Creek | Stream | | Box Butte | 42 17 59 N | 102 58 01 W |
| South Branch Camp Creek | Stream | | Otoe | 40 32 13 N | 095 47 32 W |
| South Branch Crooked Creek | Stream | | Seward | 40 50 00 N | 097 07 51 W |
| South Branch Deer Creek | Stream | | Wayne | 42 14 37 N | 097 05 50 W |
| South Branch Humbug Creek | Stream | | Stanton | 42 02 42 N | 097 06 24 W |
| South Branch Middle Creek | Stream | | Seward | 40 49 39 N | 096 51 15 W |
| South Branch Middle Loup River | Stream | | Cherry | 42 06 12 N | 101 10 19 W |
| South Branch Mira Creek | Stream | | Valley | 41 29 41 N | 098 48 50 W |
| South Branch Mud Creek | Stream | | Custer | 41 24 13 N | 099 38 44 W |
| South Branch Pebble Creek | Stream | | Cuming | 41 47 14 N | 096 49 39 W |
| South Branch Point of Rocks Creek | Stream | | Box Butte | 42 09 35 N | 103 05 47 W |
| South Branch Point of Rocks Creek | Stream | | Logan | 42 13 57 N | 103 17 50 W |
| South Branch Sand Creek | Stream | | Kearney | 40 25 05 N | 098 48 29 W |
| South Branch Sand Creek | Stream | 598 | Kearney | 40 27 16 N | 098 41 16 W |
| South Branch Snake Creek | Stream | | Box Butte | 42 07 50 N | 103 22 11 W |
| South Branch Timber Creek | Stream | | Nance | 41 26 49 N | 098 10 00 W |
| South Branch Turtle Creek | Stream | | Valley | 41 39 37 N | 099 01 32 W |
| South Branch Verdigre Creek | Stream | | Knox | 42 26 16 N | 098 08 19 W |
| South Branch Weeping Water Creek | Stream | | Otoe | 40 49 05 N | 095 56 11 W |
| South Brushy Creek | Stream | | Frontier | 40 37 51 N | 100 37 59 W |
| South Cedar Creek | Stream | | Cass | 40 51 42 N | 096 04 53 W |
| South Channel Platte River | Stream | | Hamilton | 40 50 04 N | 098 19 04 W |
| South Channel Platte River | Stream | | Phelps | 40 39 53 N | 099 15 38 W |
| South Channel Platte River | Stream | | Polk | 41 19 25 N | 097 33 41 W |
| South Creek | Stream | | Dixon | 42 33 36 N | 096 42 46 W |
| South Creek | Stream | | Washington | 41 34 24 N | 096 08 27 W |
| South Fork Big Nemaha River | Stream | | Richardson | 40 03 43 N | 095 42 12 W |
| South Fork Big Sandy Creek | Stream | | Thayer | 40 14 31 N | 097 31 55 W |
| South Fork Calamus River | Stream | | Brown | 42 19 09 N | 100 01 58 W |
| South Fork Dismal River | Stream | | Hooker | 41 51 09 N | 101 02 17 W |
| South Fork Driftwood Creek | Stream | 834 | Hitchcock | 40 02 12 N | 100 55 33 W |
| South Fork Dry Creek | Stream | | Colfax | 41 33 28 N | 097 03 06 W |
| South Fork Elkhorn River | Stream | | Holt | 42 15 19 N | 098 19 19 W |
| South Fork Elkhorn River | Stream | | Rock | 42 36 36 N | 099 11 00 W |
| South Fork Fairfield Creek | Stream | | Cherry | 42 45 25 N | 100 10 54 W |
| South Fork Johnson Creek | Stream | | Seward | 40 42 25 N | 097 15 49 W |
| South Fork Little Nemaha River | Stream | | Otoe | 40 33 59 N | 096 05 35 W |
| South Fork Plum Creek | Stream | | Cherry | 42 32 12 N | 100 06 52 W |
| South Fork Republican River | Stream | | Dundy | 40 02 30 N | 101 31 17 W |
| South Fork Soldier Creek | Stream | | Sioux | 42 41 40 N | 103 33 53 W |
| South Fork Swan Creek | Stream | | Saline | 40 22 41 N | 097 07 11 W |
| South Fork Turkey Creek | Stream | | Fillmore | 40 31 19 N | 097 24 46 W |
| South Fork Union Creek | Stream | | Platte | 41 44 51 N | 097 32 29 W |
| South Logan Creek | Stream | | Wayne | 42 16 37 N | 096 52 19 W |
| South Loup River | Stream | | Howard | 41 03 59 N | 098 39 11 W |
| South Omaha Creek | Stream | | Thurston | 42 10 17 N | 096 28 56 W |
| South Papillion Creek | Stream | | Sarpy | 41 10 45 N | 096 05 19 W |
| South Platte River | Stream | | Lincoln | 41 06 48 N | 100 40 38 W |
| South Prong South Antelope Creek | Stream | | Sioux | 42 52 00 N | 104 03 00 W |
| South Prong South Antelope Creek | Stream | | Sioux | 42 52 00 N | 104 03 00 W |
| South Table Creek | Stream | | Otoe | 40 40 35 N | 095 50 38 W |
| Southwest Branch Big Papillion Creek | Stream | | Washington | 41 28 07 N | 096 12 43 W |
| Sowbelly Creek | Stream | | Sioux | 42 50 51 N | 103 48 58 W |
| Spotted Tail Creek | Stream | | Keya Paha | 42 55 49 N | 099 19 28 W |
| Spottedtail Creek | Stream | | Sioux | 41 57 07 N | 103 48 38 W |
| Spring Branch | Stream | | Hitchcock | 40 09 56 N | 101 19 02 W |
| Spring Branch | Stream | | Lancaster | 40 36 55 N | 096 45 52 W |
| Spring Branch | Stream | | Rock | 42 28 40 N | 099 41 03 W |
| Spring Branch | Stream | | Sherman | 41 05 15 N | 099 05 35 W |
| Spring Branch | Stream | | Thayer | 40 03 21 N | 097 25 58 W |
| Spring Branch | Stream | | Wayne | 42 03 06 N | 097 24 26 W |
| Spring Brook | Stream | | Harlan | 40 00 17 N | 099 29 26 W |
| Spring Creek | Stream | | Box Butte | 42 04 58 N | 103 16 58 W |
| Spring Creek | Stream | | Boyd | 42 53 44 N | 098 42 56 W |
| Spring Creek | Stream | | Chase | 40 30 25 N | 101 20 47 W |
| Spring Creek | Stream | | Cherry | 42 53 45 N | 100 30 40 W |
| Spring Creek | Stream | | Cherry | 42 59 10 N | 100 53 43 W |
| Spring Creek | Stream | | Custer | 41 29 47 N | 099 14 36 W |
| Spring Creek | Stream | 742 | Custer | 41 15 59 N | 099 47 23 W |
| Spring Creek | Stream | | Dawson | 40 41 26 N | 099 30 10 W |
| Spring Creek | Stream | | Dundy | 40 02 16 N | 101 31 48 W |
| Spring Creek | Stream | | Frontier | 40 31 16 N | 100 22 25 W |
| Spring Creek | Stream | | Frontier | 40 23 28 N | 100 40 23 W |
| Spring Creek | Stream | | Holt | 42 49 05 N | 098 49 28 W |
| Spring Creek | Stream | | Holt | 42 41 10 N | 098 32 28 W |
| Spring Creek | Stream | | Hooker | 41 48 46 N | 101 07 13 W |
| Spring Creek | Stream | | Howard | 41 16 41 N | 098 21 00 W |
| Spring Creek | Stream | | Jefferson | 40 05 18 N | 097 05 17 W |
| Spring Creek | Stream | | Jefferson | 40 06 26 N | 096 54 22 W |
| Spring Creek | Stream | | Keith | 41 12 40 N | 101 35 48 W |
| Spring Creek | Stream | | Keya Paha | 42 52 52 N | 099 30 35 W |
| Spring Creek | Stream | | Knox | 42 30 38 N | 097 54 01 W |
| Spring Creek | Stream | | Lancaster | 40 44 04 N | 096 50 40 W |
| Spring Creek | Stream | 698 | Loup | 41 47 45 N | 099 27 54 W |
| Spring Creek | Stream | | Loup | 41 47 45 N | 099 27 53 W |
| Spring Creek | Stream | | Otoe | 40 33 57 N | 096 03 41 W |
| Spring Creek | Stream | | Perkins | 40 30 26 N | 101 20 50 W |
| Spring Creek | Stream | | Phelps | 40 12 07 N | 099 33 06 W |
| Spring Creek | Stream | | Red Willow | 40 07 52 N | 100 42 59 W |
| Spring Creek | Stream | | Richardson | 40 03 16 N | 095 51 53 W |
| Spring Creek | Stream | | Richardson | 40 09 47 N | 095 44 27 W |
| Spring Creek | Stream | 292 | Richardson | 40 03 17 N | 095 51 33 W |
| Spring Creek | Stream | 314 | Richardson | 40 02 09 N | 095 52 36 W |
| Spring Creek | Stream | | Saline | 40 34 30 N | 097 03 50 W |
| Spring Creek | Stream | | Saline | 40 26 00 N | 097 10 06 W |