Feature Name | Class | Elev. meters | County | Latitude DMS | Longitude DMS |
| Rutherford Mill (historical) | Locale | 146 | Jefferson | 39 17 00 N | 077 51 52 W |
| Saint Andrews Church | Church | 176 | Jefferson | 39 14 44 N | 077 47 50 W |
| Saint Bartholomew Church | Church | 146 | Jefferson | 39 21 18 N | 077 55 38 W |
| Saint Georges Chapel (historical) | Church | 164 | Jefferson | 39 17 01 N | 077 52 30 W |
| Saint James Catholic Church | Church | 159 | Jefferson | 39 17 14 N | 077 51 31 W |
| Saint James Cemetery | Cemetery | 153 | Jefferson | 39 22 04 N | 077 47 58 W |
| Saint James Church | Church | 152 | Jefferson | 39 22 05 N | 077 47 60 W |
| Saint Johns Baptist Church | Church | 140 | Jefferson | 39 25 58 N | 077 48 43 W |
| Saint Johns Church | Church | 155 | Jefferson | 39 13 23 N | 077 54 07 W |
| Saint Johns Episcopal Church | Church | 158 | Jefferson | 39 13 02 N | 077 54 23 W |
| Saint Johns Episcopal Church (historical) | Church | 138 | Jefferson | 39 19 23 N | 077 43 58 W |
| Saint Peters Lutheran Church | Church | 128 | Jefferson | 39 25 47 N | 077 48 23 W |
| Saint Peters Roman Catholic Church | Church | 91 | Jefferson | 39 19 21 N | 077 43 53 W |
| Saint Peters School (historical) | School | 92 | Jefferson | 39 19 21 N | 077 43 54 W |
| Saint Phillips Episcopal Church | Church | 153 | Jefferson | 39 17 08 N | 077 51 39 W |
| Saint Thomas Evangelical Lutheran Church | Church | 158 | Jefferson | 39 17 51 N | 077 51 41 W |
| Schlack Farm Spring | Spring | 152 | Jefferson | 39 18 02 N | 077 59 51 W |
| Seventh Day Adventist Church | Church | 160 | Jefferson | 39 17 35 N | 077 51 36 W |
| Shannon Hill Spring | Spring | 121 | Jefferson | 39 13 50 N | 077 50 41 W |
| Shannondale | Populated Place | 172 | Jefferson | 39 13 01 N | 077 48 27 W |
| Shannondale Blue Sulphur Spring | Spring | 107 | Jefferson | 39 13 48 N | 077 50 13 W |
| Shannondale Ferry (historical) | Crossing | 103 | Jefferson | 39 13 40 N | 077 50 28 W |
| Shannondale Red Sulphur Spring | Spring | 107 | Jefferson | 39 13 48 N | 077 50 13 W |
| Shannondale Springs Wildlife Management Area | Park | 140 | Jefferson | 39 14 00 N | 077 49 06 W |
| Shannondale White Sulphur Spring | Spring | 107 | Jefferson | 39 13 48 N | 077 50 13 W |
| Shaw Run | Stream | | Jefferson | 39 24 21 N | 077 55 48 W |
| Shenandoah Bridge (historical) | Bridge | 73 | Jefferson | 39 19 17 N | 077 43 46 W |
| Shenandoah Downs | Locale | 149 | Jefferson | 39 18 17 N | 077 50 47 W |
| Shenandoah Junction | Populated Place | 162 | Jefferson | 39 21 31 N | 077 50 35 W |
| Shenandoah Junction Post Office | Post Office | 168 | Jefferson | 39 21 31 N | 077 50 26 W |
| Shenandoah River | Stream | | Jefferson | 39 19 21 N | 077 43 40 W |
| Shepherd School (historical) | School | 140 | Jefferson | 39 28 08 N | 077 48 35 W |
| Shepherd University | School | 116 | Jefferson | 39 26 01 N | 077 48 15 W |
| Shepherds Ford | Crossing | 94 | Jefferson | 39 29 25 N | 077 47 57 W |
| Shepherds Graveyard | Cemetery | 134 | Jefferson | 39 25 48 N | 077 48 27 W |
| Shepherds Grist Mill | Locale | 113 | Jefferson | 39 25 53 N | 077 48 09 W |
| Shepherdstown | Populated Place | 123 | Jefferson | 39 25 48 N | 077 48 15 W |
| Shepherdstown Elementary School | School | 129 | Jefferson | 39 25 34 N | 077 48 31 W |
| Shepherdstown Historic District | Park | 126 | Jefferson | 39 25 51 N | 077 48 21 W |
| Shepherdstown Magisterial District | Civil | 146 | Jefferson | 39 24 48 N | 077 48 34 W |
| Shepherdstown Middle School | School | 136 | Jefferson | 39 25 38 N | 077 48 41 W |
| Shipley Elementary School | School | 143 | Jefferson | 39 19 05 N | 077 46 49 W |
| Silver Grove | Populated Place | 203 | Jefferson | 39 17 58 N | 077 45 06 W |
| Silver Grove Cemetery | Cemetery | 203 | Jefferson | 39 17 46 N | 077 45 19 W |
| Silver Grove School (historical) | School | 199 | Jefferson | 39 17 52 N | 077 45 11 W |
| Silver Grove United Methodist Church | Church | 204 | Jefferson | 39 17 45 N | 077 45 18 W |
| Skeetersville | Populated Place | 140 | Jefferson | 39 21 51 N | 077 48 56 W |
| Sleepy Hollow Country Club | Locale | 146 | Jefferson | 39 18 36 N | 077 48 56 W |
| Snyder Hill | Summit | 199 | Jefferson | 39 16 05 N | 077 47 36 W |
| South Jefferson Elementary School | School | 176 | Jefferson | 39 15 16 N | 077 55 51 W |
| Southwood Spring | Spring | 146 | Jefferson | 39 25 01 N | 077 52 10 W |
| Spring Hill Farm Spring | Spring | 124 | Jefferson | 39 28 00 N | 077 50 07 W |
| Springdale Farm Spring | Spring | 158 | Jefferson | 39 20 35 N | 077 54 39 W |
| Springdale Farm Spring | Spring | 122 | Jefferson | 39 28 22 N | 077 50 02 W |
| Stonefield Spring | Spring | 122 | Jefferson | 39 16 52 N | 077 49 31 W |
| Storer College (historical) | School | 160 | Jefferson | 39 19 26 N | 077 44 29 W |
| Summit Point | Populated Place | 191 | Jefferson | 39 14 58 N | 077 57 31 W |
| Summit Point Post Office | Post Office | 191 | Jefferson | 39 14 56 N | 077 57 28 W |
| Swimley School (historical) | School | 172 | Jefferson | 39 16 02 N | 077 59 44 W |
| T A Lowery Elementary School | School | | Jefferson | 39 21 22 N | 077 51 13 W |
| Terrapin Neck | Cape | 135 | Jefferson | 39 29 33 N | 077 46 49 W |
| The Point | Cape | 80 | Jefferson | 39 19 22 N | 077 43 43 W |
| The Staircase | Rapids | 79 | Jefferson | 39 19 10 N | 077 44 34 W |
| Tom Painter Farm Spring | Spring | 163 | Jefferson | 39 14 30 N | 077 47 35 W |
| Town Run | Stream | | Jefferson | 39 26 04 N | 077 48 04 W |
| Trinity Church | Church | 173 | Jefferson | 39 20 38 N | 077 51 21 W |
| Turkey Run | Stream | | Jefferson | 39 18 31 N | 078 00 08 W |
| Turkey Run Spring | Spring | 156 | Jefferson | 39 18 00 N | 077 58 07 W |
| U S Fish and Wildlife Service National Conservation Training Center | Building | | Jefferson | 39 26 34 N | 077 48 14 W |
| United States Armory and Arsenal at Harpers Ferry (historical) | Military (Historical) | 85 | Jefferson | 39 19 26 N | 077 43 50 W |
| United States Department of Agriculture Appalachian Fruit Research Station | Locale | 177 | Jefferson | 39 21 19 N | 077 52 34 W |
| University of West Virginia Experimental Farm | Locale | 158 | Jefferson | 39 23 38 N | 077 53 34 W |
| Uvilla | Populated Place | 146 | Jefferson | 39 22 08 N | 077 48 01 W |
| Uvilla Cemetery | Cemetery | 150 | Jefferson | 39 21 57 N | 077 47 59 W |
| Uvilla United Methodist Church | Church | 152 | Jefferson | 39 21 58 N | 077 47 59 W |
| Van Meter Farm Spring | Spring | 155 | Jefferson | 39 24 45 N | 077 50 45 W |
| Virginius (historical) | Populated Place | 85 | Jefferson | 39 19 17 N | 077 44 23 W |
| Virginius Island | Island | 83 | Jefferson | 39 19 17 N | 077 44 21 W |
| Wainwright Baptist Church | Church | 152 | Jefferson | 39 17 08 N | 077 51 48 W |
| Walker and Vine Springs | Spring | 199 | Jefferson | 39 17 59 N | 077 45 07 W |
| Walker Spring | Spring | 179 | Jefferson | 39 18 09 N | 077 44 58 W |
| Walpers Cross-Roads | Populated Place | 162 | Jefferson | 39 23 59 N | 077 52 18 W |
| Warner Spring | Spring | 214 | Jefferson | 39 18 29 N | 077 44 44 W |
| Washington Burial Ground | Cemetery | 170 | Jefferson | 39 18 07 N | 077 54 59 W |
| Washington Spring | Spring | 171 | Jefferson | 39 18 01 N | 077 54 30 W |
| Wernwags Sawmill (historical) | Locale | 80 | Jefferson | 39 19 16 N | 077 44 05 W |
| West Virginia University Experimental Farm | School | 158 | Jefferson | 39 23 45 N | 077 53 17 W |
| Wheatland | Populated Place | 143 | Jefferson | 39 14 10 N | 077 53 60 W |
| White House Spring | Spring | 182 | Jefferson | 39 15 01 N | 077 56 46 W |
| Whitmores Ford | Crossing | 126 | Jefferson | 39 20 47 N | 077 58 52 W |
| Wilson Gap | Gap | 440 | Jefferson | 39 10 19 N | 077 48 22 W |
| Wilt Farm Spring | Spring | 146 | Jefferson | 39 15 26 N | 077 47 36 W |
| Wiltshire School (historical) | School | 183 | Jefferson | 39 20 10 N | 077 53 19 W |
| Wright Denny Elementary School | School | 155 | Jefferson | 39 17 14 N | 077 51 40 W |
| WSHC-FM (Shepherdstown) | Tower | 124 | Jefferson | 39 25 53 N | 077 48 17 W |
| WXVA-AM (Charles Town) | Tower | 159 | Jefferson | 39 16 23 N | 077 51 55 W |
| WXVA-FM (Charles Town) | Tower | 159 | Jefferson | 39 16 23 N | 077 51 55 W |
| Wynkoop Farm Spring | Spring | 175 | Jefferson | 39 15 16 N | 077 46 40 W |
| Wynkoop Spring | Populated Place | 140 | Jefferson | 39 26 10 N | 077 51 39 W |
| Wysong Spring | Spring | 154 | Jefferson | 39 17 33 N | 077 52 49 W |
| Zion Baptist Church | Church | 153 | Jefferson | 39 17 11 N | 077 52 06 W |
| Zion Cemetery | Cemetery | 167 | Jefferson | 39 17 20 N | 077 51 22 W |
| Zion Church | Church | 132 | Jefferson | 39 21 51 N | 077 46 24 W |
| Zion Episcopal Church | Church | 170 | Jefferson | 39 17 20 N | 077 51 21 W |
| Aarons | Populated Place | 200 | Kanawha | 38 29 35 N | 081 32 03 W |
| Aarons Creek | Stream | | Kanawha | 38 21 27 N | 081 44 00 W |
| Aarons Fork | Stream | | Kanawha | 38 27 46 N | 081 30 00 W |
| Aarons Fork School (historical) | School | 210 | Kanawha | 38 29 32 N | 081 32 03 W |
| Abbott Creek | Stream | | Kanawha | 38 00 24 N | 081 25 21 W |
| Abney Street Church of God | Church | 184 | Kanawha | 38 22 53 N | 081 49 11 W |